getProj {MineICA} | R Documentation |
Extract projection values of a given set of IDs on a subset of components.
getProj(icaSet, ids, keepComp, level = c("features", "genes"))
icaSet |
An object of class |
ids |
feature or gene IDs |
keepComp |
Index of the components to be conserved,
must be in |
level |
The level of projections to be extracted,
either |
A vector or a list of projection values
Anne Biton
## load an example of IcaSet data(icaSetCarbayo) ##get the projection of your favorite proliferation genes #on all components getProj(icaSetCarbayo, ids=c("TOP2A","CDK1","CDC20"), level="genes") #on some components getProj(icaSetCarbayo, ids=c("TOP2A","CDK1","CDC20"), keepComp=c(1,6,9,12),level="genes") ##get the gene projection values on the sixth component getProj(icaSetCarbayo, keepComp=6,level="genes")