pre_partial {INDEED}R Documentation

Data preprocessing for partial correlaton analysis

Description

A method that integrates differential expression (DE) analysis and differential network (DN) analysis to select biomarker candidates for survival time prediction. pre_partial is the pre-processing step for INDEED partial differential analysis

Usage

pre_partial(data = NULL, class_label = NULL, id = NULL)

Arguments

data

input matrix of expression from all metabolites from all samples

class_label

a binary array with 0: group 1; 1: group 2.

id

an array of biomolecule ID to label.

Value

a list of processed data for next step and rho, error curve for group 1 and 2

Examples

pre_partial(data=Met_GU,class_label = Met_Group_GU,id=Met_name_GU)

[Package INDEED version 1.0.1 Index]