INDEED {INDEED} | R Documentation |
The INDEED package provides a important functions below: pre_partial
pre_partical function preprocess data for partical correlation analysis, the result contains list of preprocessed data and rho values and error plot for user to choose desired rho value
partial_cor function performs partical correlation analysis user input preprocessed list from pre_partical step and the rho choosing method or rho of their choice and number of permutations (default 1000), p-value is optional the result of score table and differential network will be returned
non_partial_cor function performs correlation analysis user input data,class label,p-value, sample id, number of permutations, and method(default pearson) p value is optional the result of score table and differential network will be returned