makeGSEAplots {HTSanalyzeR} | R Documentation |
This is an internal function.
makeGSEAplots(geneList, geneSet, exponent, filepath, filename, output='png', ...)
geneList |
a numeric or integer vector of phenotypes in descending or ascending order with elements named by their Entrez IDs (no duplicates nor NA values) |
geneSet |
a character vector of gene identifiers of a gene set |
exponent |
a single integer or numeric value used in weighting phenotypes in GSEA |
filepath |
a single character value specifying the directory where the GSEA plot will be stored |
filename |
a single character value specifying the name of the file where the GSEA plot will be stored |
output |
a single character value specifying the format of output image: "pdf" or "png" |
... |
other arguments used by the function 'png' or 'pdf' such as width and height |
This is an internal function.
Benilton Carvalho, Xin Wang