readHeinzGraph {BioNet} | R Documentation |
Function to convert the HEINZ output to a graph object, or if the output is in matrix form, it will create a list of graphs. The function needs the node and the original network, from which the module is calculated.
readHeinzGraph(node.file, network, format=c("graphNEL", "igraph"))
node.file |
Heinz node output file. |
network |
Original network from which Heinz input was created. |
format |
Graph format of output, either igraph or graphNEL. |
Graph object.
Daniela Beisser
library(DLBCL) data(interactome) # precomputed Heinz output files ## Not run: lib <- file.path(.path.package("BioNet"), "extdata") module <- readHeinzGraph(node.file=file.path(lib, "lymphoma_nodes_001.txt.0.hnz"), network=interactome, format="graphNEL"); plotModule(module); ## End(Not run)