plot.localZScoreResultsList {regioneR} | R Documentation |
Function for plotting the a localZScoreResultsList
object.
## S3 method for class 'localZScoreResultsList' plot(x, ncol = NA, main = "", num.x.labels = 5, ...)
x |
an object of class |
main |
a character specifying the main title of the plot. Defaults to no title. |
num.x.labels |
a numeric specifying the number of ticks to label the x axis. The total number will be 2*num.x.labels + 1. Defaults to 5. |
... |
further arguments to be passed to or from methods. |
A plot is created on the current graphics device.
genome <- filterChromosomes(getGenome("hg19"), keep.chr="chr1") A <- createRandomRegions(nregions=20, length.mean=10000000, length.sd=20000, genome=genome, non.overlapping=FALSE) B <- c(A, createRandomRegions(nregions=10, length.mean=100000, length.sd=20000, genome=genome, non.overlapping=FALSE)) pt <- overlapPermTest(A=A, B=B, ntimes=10, genome=genome, non.overlapping=FALSE) lz <- localZScore(A=A, B=B, pt=pt) plot(lz) pt2 <- permTest(A=A, B=B, ntimes=10, randomize.function=randomizeRegions, evaluate.function=list(overlap=numOverlaps, distance=meanDistance), genome=genome, non.overlapping=FALSE) plot(pt2)