write.flowSet {flowCore} | R Documentation |
Write FCS file for each flowFrame in a flowSet
write.flowSet(x, outdir=identifier(x), filename, ...)
x |
A |
filename |
A character scalar or vector giving the output file names. By
default, the function will use the identifiers of the individual |
outdir |
A character scalar giving the output directory. As the
default, the output of |
... |
Further arguments that are passed on to
|
The function write.flowSet
creates FCS 3.0 standard file for
all flowFrames
in an object of class flowSet
. In
addition, it will write the content of the phenoData
slot in
the ASCII file "annotation.txt"
. This file can subsequently be
used to reconstruct the whole flowSet
using the
read.flowSet
function, e.g.:
read.flowSet(path=outdir, phenoData="annotation.txt"
The function uses write.FCS
for the actual writing of
the FCS files.
A character of the output directory.
F. Hahne
link[flowCore]{write.FCS}
## sample data data(GvHD) foo <- GvHD[1:5] outDir <- file.path(tempdir(), "foo") ## now write out into files write.flowSet(foo, outDir) dir(outDir) ## and read back in bar <- read.flowSet(path=outDir, phenoData="annotation.txt")