ecoli.proteome {dagLogo} | R Documentation |
the subset proteome of Escherichia coli
data(ecoli.proteome)
An object of Proteome for Escherichia coli proteome. The format is: A list with one data frame and an character.
proteome
'data.frame': obs. of 4 variables
type
'character': "UniProt"
The format of proteome is
ENTREZ_GENE
a character vector, records entrez gene id
SEQUENCE
a character vector, peptide sequences
ID
a character vector, Uniprot ID
LEN
a character vector, length of peptides
used in the examples Annotation data obtained by: library(UniProt.ws) taxId(UniProt.ws) <- 562 proteome <- prepareProteome(UniProt.ws, species="Escherichia coli")
data(ecoli.proteome) head(ecoli.proteome@proteome) ecoli.proteome@type