testDAUresults-class {dagLogo} | R Documentation |
"testDAUresults"
An object of class "testDAUresults"
represents background model.
Objects can be created by calls of the form
new("dagBackground", group="character",
difference="matrix",
zscore="matrix",
pvalue="matrix",
background="matrix",
motif="matrix",
upstream="numeric",
downstream="numeric")
.
group
Object of class "character"
could be "null", "classic", "charge", "chemistry", "hydrophobicity"
difference
code"matrix" the difference of inputs from background for each amino acid in each position
zscore
code"matrix" z score for each amino acid in each position
pvalue
code"matrix" pvalue for each amino acid in each position
background
code"matrix" background frequencies for each amino acid in each position
motif
code"matrix" inputs frequencies for each amino acid in each position
upstream
"numeric"
The upstream offset from anchor
downstream
"numeric"
The downstream offset from anchor