enricher {clusterProfiler} | R Documentation |
A universal enrichment analyzer
enricher(gene, pvalueCutoff = 0.05, pAdjustMethod = "BH", universe, minGSSize = 10, maxGSSize = 500, qvalueCutoff = 0.2, TERM2GENE, TERM2NAME = NA)
gene |
a vector of gene id |
pvalueCutoff |
pvalue cutoff |
pAdjustMethod |
one of "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none" |
universe |
background genes |
minGSSize |
minimal size of genes annotated for testing |
maxGSSize |
maximal size of genes annotated for testing |
qvalueCutoff |
qvalue cutoff |
TERM2GENE |
user input annotation of TERM TO GENE mapping, a data.frame of 2 column with term and gene |
TERM2NAME |
user input of TERM TO NAME mapping, a data.frame of 2 column with term and name |
A enrichResult
instance
Guangchuang Yu