KEGG_path2extid {clusterProfiler}R Documentation

KEGG_path2extid

Description

query all genes in a KEGG pathway or module

Usage

KEGG_path2extid(keggID, species = sub("\\d+$", "", keggID),
  keggType = "Path", keyType = "kegg")

Arguments

keggID

KEGG ID, path or module ID

species

species

keggType

one of 'Path' or 'Module'

keyType

KEGG gene type, one of "ncbi-proteinid", "ncbi-geneid", "uniprot", or "kegg"

Value

extid vector

Author(s)

guangchuang yu


[Package clusterProfiler version 3.8.1 Index]