simplify {clusterProfiler} | R Documentation |
simplify output from enrichGO by removing redundancy of enriched GO terms
simplify output from compareCluster by removing redundancy of enriched GO terms
## S4 method for signature 'enrichResult' simplify(x, cutoff = 0.7, by = "p.adjust", select_fun = min, measure = "Wang", semData = NULL) ## S4 method for signature 'compareClusterResult' simplify(x, cutoff = 0.7, by = "p.adjust", select_fun = min, measure = "Wang", semData = NULL)
x |
output of enrichGO |
cutoff |
similarity cutoff |
by |
feature to select representative term, selected by 'select_fun' function |
select_fun |
function to select feature passed by 'by' parameter |
measure |
method to measure similarity |
semData |
GOSemSimDATA object |
updated enrichResult object
updated compareClusterResult object
Guangchuang Yu
Guangchuang Yu
issue #28 https://github.com/GuangchuangYu/clusterProfiler/issues/28