getTotalFragments {chromVAR} | R Documentation |
getTotalFragments
getTotalFragments(object) ## S4 method for signature 'SummarizedExperiment' getTotalFragments(object) ## S4 method for signature 'MatrixOrmatrix' getTotalFragments(object)
object |
SummarizedExperiment, matrix, or Matrix object |
sum of all counts within object
SummarizedExperiment
: method for SummarizedExperiment object
with counts assay
MatrixOrmatrix
: method for Matrix or matrix object
getFragmentsPerSample
,
getFragmentsPerPeak
# Load very small example counts (already filtered) data(mini_counts, package = "chromVAR") total_frags <- getTotalFragments(mini_counts)