getFragmentsPerSample {chromVAR} | R Documentation |
getFragmentsPerSample
getFragmentsPerSample(object) ## S4 method for signature 'SummarizedExperiment' getFragmentsPerSample(object) ## S4 method for signature 'MatrixOrmatrix' getFragmentsPerSample(object)
object |
SummarizedExperiment, matrix, or Matrix object |
vector with sum across columns of counts assay within chromVARCounts
SummarizedExperiment
: method for SummarizedExperiment object
with counts assay
MatrixOrmatrix
: method for Matrix or matrix object
getFragmentsPerPeak
,
getTotalFragments
# Load very small example counts (already filtered) data(mini_counts, package = "chromVAR") frags_per_sample <- getFragmentsPerSample(mini_counts)