getFreqMutData {bioCancer} | R Documentation |
get mutation frequency
getFreqMutData(list, geneListLabel)
list |
a list of data frame with mutation data. Each data frame is for one study |
geneListLabel |
file name of geneList examples: "73" |
a data frame with mutation frequency. gene is in rows and study is in column
cgds <- CGDS("http://www.cbioportal.org/public-portal/") ## Not run: geneList <- whichGeneList("73") r_data <- new.env() MutData <- getMutationData(cgds,"gbm_tcga_pub_all", "gbm_tcga_pub_mutations", geneList ) FreqMut <- getFreqMutData(list(ls1=MutData, ls2=MutData), "73") ## End(Not run)