getGenesClassification {bioCancer} | R Documentation |
get genes classification
getGenesClassification(checked_Studies, GeneList, samplesize, threshold, listGenProfs, listCases)
checked_Studies |
checked studies |
GeneList |
gene list |
samplesize |
sample size |
threshold |
p-value threshold |
listGenProfs |
list of genetic profiles |
listCases |
list of cases |
A table with genes classed by study
cgds <- CGDS("http://www.cbioportal.org/public-portal/") listStudies <- cgdsr::getCancerStudies(cgds) ## Not run: checked_Stdudies <- listStudies[3:5] listCases <- getList_Cases(listStudies[1:3]) listGenProfs <- getList_GenProfs(listStudies[1:3]) GeneList <- c('P53', 'IFI16', 'BRCA1') samplesize <- 50 threshold <- 0.95 table <- getGenesClassification(checked_Studies, GeneList, samplesize ,threshold ,listGenProfs, listCases) ## End(Not run)