aafPathwayItem-class {annaffy} | R Documentation |
An abstraction for KEGG pathway id elements from Bioconductor
data packages. Multiple instances of this class are held by the
wrapper class aafPathway
.
Objects are generally created by the aafPathway
constructor.
Objects can also be created manually by calls of the form
new("aafPathwayItem", id, name, enzyme)
.
id
:Object of class character
containing KEGG pathway id
name
:Object of class character
containing textual name
enzyme
:Object of class character
containing the Enzyme
Commision number if applicable
(aafPathwayItem): Returns textual representation formatted
"id
: name
".
(aafPathwayItem): Returns a URL to the corresponding entry in the Kyoto Encyclopedia of Genes and Genomes database. If there is a corresponding EC number, it will be highlighted in red.
(aafPathwayItem): Returns an HTML representation including the URL link and pathway name.
Colin A. Smith, annaffy@colinsmith.org