mbrPreprocess,matrix-method {RTNduals} | R Documentation |
A preprocessing function for objects of class MBR.
## S4 method for signature 'matrix' mbrPreprocess(gexp, regulatoryElements, verbose = TRUE, ...)
gexp |
A numerical matrix, typically with mRNA and/or miRNA expression values. |
regulatoryElements |
A named vector with regulatory elements listed in 'gexp' rownames. |
verbose |
A single logical value specifying to display detailed messages (when verbose=TRUE) or not (when verbose=FALSE). |
... |
Additional arguments passed on to
|
A preprocessed 'MBR-class' object.
##--- load a dataset for demonstration data("dt4rtn", package = "RTN") gexp <- dt4rtn$gexp annot <- dt4rtn$gexpIDs tfs <- dt4rtn$tfs[c("IRF8","IRF1","PRDM1","AFF3","E2F3")] ##--- run mbrPreprocess rmbr <- mbrPreprocess(gexp=gexp, regulatoryElements = tfs, rowAnnotation=annot)