mbrGet,MBR-method {RTNduals} | R Documentation |
Get information from individual slots in an MBR object and any available results from previous analysis.
## S4 method for signature 'MBR' mbrGet(object, what = "status")
object |
A preprocessed object of class MBR |
what |
a single character value specifying which information should be retrieved from the slots. Options: "TNI", "regulatoryElements", "dualRegulons", "results", "para", "summary", "status", "dualsCorrelation", "dualsOverlap", and "dualsCorMatrix" |
Content from slots in the MBR object
##--- load a dataset for demonstration data("dt4rtn", package = "RTN") gexp <- dt4rtn$gexp annot <- dt4rtn$gexpIDs tfs <- dt4rtn$tfs[c("IRF8","IRF1","PRDM1","AFF3","E2F3")] ##--- run mbrPreprocess rmbr <- mbrPreprocess(gexp=gexp, regulatoryElements = tfs, rowAnnotation=annot) ##--- get the 'TNI' slot using 'mbrGet' tni <- mbrGet(rmbr, what="TNI")