datasetsTCGA {RTCGA} | R Documentation |
Snapshots of the clinical, mutations, CNVs, rnaseq, RPPA, mRNA, miRNASeq and methylation datasets from the 2015-11-01
release date (check all dates of release with checkTCGA('Dates')
) are included in the RTCGA.data
family (factory) that contains 9 packages:
RTCGA.rnaseq rnaseq
RTCGA.clinical clinical
RTCGA.mutations mutations
RTCGA.CNV CNV
RTCGA.RPPA RPPA
RTCGA.mRNA mRNA
RTCGA.miRNASeq miRNASeq
RTCGA.methylation methylation
RTCGA.PANCAN12 (not from TCGA)
For more detailed information visit RTCGA.data website https://rtcga.github.io/RTCGA. One can install all data packages with installTCGA.
If you have any problems, issues or think that something is missing or is not clear please post an issue on https://github.com/RTCGA/RTCGA/issues.
Marcin Kosinski [aut, cre] m.p.kosinski@gmail.com
Przemyslaw Biecek [aut] przemyslaw.biecek@gmail.com
Witold Chodor [aut] witoldchodor@gmail.com
RTCGA website http://rtcga.github.io/RTCGA.
Other RTCGA: RTCGA-package
,
boxplotTCGA
, checkTCGA
,
convertTCGA
, downloadTCGA
,
expressionsTCGA
, heatmapTCGA
,
infoTCGA
, installTCGA
,
kmTCGA
, mutationsTCGA
,
pcaTCGA
, readTCGA
,
survivalTCGA
, theme_RTCGA
# installation of packages containing snapshots # of TCGA project's datasets ## Not run: ## RTCGA GitHub development newest versions library(RTCGA) ?installTCGA ## Bioconductor releases source('http://bioconductor.org/biocLite.R') biocLite(RTCGA.clinical) biocLite(RTCGA.mutations) biocLite(RTCGA.rnaseq) biocLite(RTCGA.CNV) biocLite(RTCGA.RPPA) biocLite(RTCGA.mRNA) biocLite(RTCGA.miRNASeq) biocLite(RTCGA.methylation) # use cases and examples + more data info browseVignettes('RTCGA') ## End(Not run)