extractCalibrationStatus {IsoformSwitchAnalyzeR}R Documentation

Extract Whether P-values were Corrected.

Description

This function allows the user to extract information about whether the p-values were calibrated as described in Ferguson et al or not.

Usage

extractCalibrationStatus(
    switchAnalyzeRlist
)

Arguments

switchAnalyzeRlist

A switchAnalyzeRlist object which have been analyzed with isoformSwitchTest.

Value

A data.frame where it for each comparison was indicated (via a logical) whether the p-value correction was performed or not.

Author(s)

Kristoffer Vitting-Seerup

References

See Also

isoformSwitchTest

Examples

# Load example data and prefilter
data("exampleSwitchList")
exampleSwitchList <- preFilter(exampleSwitchList)

# Perfom test
exampleSwitchListAnalyzed <- isoformSwitchTest(exampleSwitchList)

# extract whether p-value callibration was performed
extractCalibrationStatus(exampleSwitchListAnalyzed)

[Package IsoformSwitchAnalyzeR version 1.2.0 Index]