showSigNodes {GOFunction} | R Documentation |
According to the GO DAG structure created by the "createGODAG" function, this function draws the corresponding plot.
DAG |
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sigTerm |
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sigTerm_Local |
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sigTerm_Global |
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dagTermInfo |
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bmpSize |
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filename |
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This function saves the structure of GO DAG for all statistic significant terms into a plot (e.g. "sigTerm.bmp") in the current working folder. In this plot, "circle" represents terms removed after local redundancy treatment, "box" represents terms removed after treating global redundancy and "rectangle" represents the remained terms with evidence that their significance should not be simply due to the overlapping genes. The dfferent color shades represent the adjusted p values of the terms.
Jing Wang
GOFunction
enrichmentFunction
localRedundancy
globalRedundancy
createGODAG