calcCoGAPSStat {CoGAPS} | R Documentation |
Calculate Gene Set Statistics
calcCoGAPSStat(Amean, Asd, GStoGenes, numPerm = 500)
Amean |
A matrix mean values |
Asd |
A matrix standard deviations |
GStoGenes |
data.frame or list with gene sets |
numPerm |
number of permutations for null |
calculates the gene set statistics for each column of A using a Z-score from the elements of the A matrix, the input gene set, and permutation tests
gene set statistics for each column of A
data('SimpSim') calcCoGAPSStat(SimpSim.result$Amean, SimpSim.result$Asd, GStoGenes=GSets, numPerm=500)