whichstrand {ChIPanalyser} | R Documentation |
whichstrand
slot in a
genomicProfileParameters
object
Accessor method for the whichstrand
slot in a
genomicProfileParameters
object
whichstrand(object)
object |
|
PWM Score may be computed on either the positive strand ("+"), the negative strand ("-") or on both strands ("+-").
Returns on which strand PWM Scores should be computed
( whichstrand
in a genomicProfileParameters
object)
Patrick C. N. Martin <pm16057@essex.ac.uk>
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
# Loading data data(ChIPanalyserData) #Loading PFM files PFM <- file.path(system.file("extdata",package="ChIPanalyser"),"BCDSlx.pfm") #Building data objects GPP <- genomicProfileParameters(PFM=PFM, whichstrand="+-") #Setting New Value for whichstrand whichstrand(GPP)