Supported File Formats
Cytoscape supports the following file formats:
Cytoscape BioDataServer Format
.Onto, .syno and .anno files.
Manifest file required.
GO Annotation and Ontology Format
OBO and Gene Association files.
Latest data is available at
Open Biomedical Ontologies
Taxonomy Table
Taxonomy table is obtained from NCBI:
NCBI Taxonomy name/id Status Report Page