CALIB

DOI: 10.18129/B9.bioc.CALIB    

Calibration model for estimating absolute expression levels from microarray data

Bioconductor version: Release (3.6)

This package contains functions for normalizing spotted microarray data, based on a physically motivated calibration model. The model parameters and error distributions are estimated from external control spikes.

Author: Hui Zhao, Kristof Engelen, Bart De Moor and Kathleen Marchal

Maintainer: Hui Zhao <hui.zhao at biw.kuleuven.be>

Citation (from within R, enter citation("CALIB")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CALIB")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CALIB")

 

PDF R Script CALIB Overview
PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, Software, TwoChannel
Version 1.44.0
In Bioconductor since BioC 2.0 (R-2.5) (11 years)
License LGPL
Depends R (>= 2.10), limma, methods
Imports limma, methods, graphics, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CALIB_1.44.0.tar.gz
Windows Binary CALIB_1.44.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) CALIB_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CALIB
Package Short Url http://bioconductor.org/packages/CALIB/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: