ABSSeq

DOI: 10.18129/B9.bioc.ABSSeq    

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Bioconductor version: Release (3.6)

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Author: Wentao Yang

Maintainer: Wentao Yang <wyang at zoologie.uni-kiel.de>

Citation (from within R, enter citation("ABSSeq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABSSeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABSSeq")

 

PDF R Script ABSSeq
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, Software
Version 1.32.3
In Bioconductor since BioC 2.14 (R-3.1) (4 years)
License GPL (>= 3)
Depends R (>= 2.10), methods
Imports locfit, limma
LinkingTo
Suggests edgeR
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ABSSeq_1.32.3.tar.gz
Windows Binary ABSSeq_1.32.3.zip
Mac OS X 10.11 (El Capitan) ABSSeq_1.32.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/ABSSeq
Package Short Url http://bioconductor.org/packages/ABSSeq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive

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