paml_rst-class {treeio} | R Documentation |
Class "paml_rst" This class stores information of rst file from PAML output
fields
availabel attributes
treetext
tree text
phylo
phylo object
seq_type
one of "NT" and "AA"
tip_seq
sequences of tips
marginal_ancseq
Marginal reconstruction of ancestral sequences
joint_ancseq
Joint reconstruction of ancestral sequences
marginal_subs
sequence substitutions based on marginal_ancseq
joint_subs
sequence substitutions based on joint_ancseq
marginal_AA_subs
Amino acid sequence substitutions based on marginal_ancseq
joint_AA_subs
Amino acid sequence substitutions based on joint_ancseq
rstfile
rst file
extraInfo
extra information
Guangchuang Yu http://guangchuangyu.github.io