plotCorrelation {psichomics} | R Documentation |
Plot correlation results from correlateGEandAS
plotCorrelation(corr, autoZoom = FALSE, loessSmooth = TRUE, loessFamily = c("gaussian", "symmetric"), colour = "black", alpha = 0.2, size = 1.5, loessColour = "red", loessAlpha = 1, loessWidth = 0.5, ...)
corr |
List of correlations |
autoZoom |
Boolean: automatically set the range of PSI values based on
available data? If |
loessSmooth |
Boolean: plot a smooth curve computed by
|
loessFamily |
Character: if |
colour |
Character: points' colour |
alpha |
Numeric: points' alpha |
size |
Numeric: points' size |
loessColour |
Character: loess line's colour |
loessAlpha |
Numeric: loess line's opacity |
loessWidth |
Numeric: loess line's width |
... |
Arguments passed on to
|
Renders plots for each correlation in corr
annot <- readFile("ex_splicing_annotation.RDS") junctionQuant <- readFile("ex_junctionQuant.RDS") psi <- quantifySplicing(annot, junctionQuant, eventType=c("SE", "MXE")) geneExpr <- readFile("ex_gene_expression.RDS") corr <- correlateGEandAS(geneExpr, psi, "ALDOA") plotCorrelation(corr)