importJaffa {chimeraviz} | R Documentation |
A function that imports the results from a JAFFA run, typically from a jaffa_results.csv file, into a list of Fusion objects.
importJaffa(filename, genomeVersion, limit)
filename |
Filename for the jaffa_results.csv file. |
genomeVersion |
Which genome was used in mapping (hg19, hg38, etc.). |
limit |
A limit on how many lines to read. |
A list of Fusion objects.
jaffaData <- system.file( "extdata", "jaffa_results.csv", package = "chimeraviz") fusions <- importJaffa(jaffaData, "hg19", 3) # This should import a list of 3 fusions described in Fusion objects.