partnerGeneEnsemblId {chimeraviz} | R Documentation |
This getter retrieves the Ensembl ID from a PartnerGene object
This sets the Ensembl ID of a PartnerGene object.
partnerGeneEnsemblId(x) ## S4 method for signature 'PartnerGene' partnerGeneEnsemblId(x) partnerGeneEnsemblId(object) <- value ## S4 replacement method for signature 'PartnerGene' partnerGeneEnsemblId(object) <- value
x |
The PartnerGene object you wish to retrieve the Ensembl ID for. |
object |
The PartnerGene object you wish to set a new Ensembl ID for. |
value |
The new Ensembl ID. |
The upstream fusion partner gene Ensembl ID.
# Load data defuseData <- system.file( "extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- importDefuse(defuseData, "hg19", 1) fusion <- fusions[[1]] # Get the Ensembl ID from the upstream fusion partner gene partnerGeneEnsemblId(upstreamPartnerGene(fusion)) # Load data defuseData <- system.file( "extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- importDefuse(defuseData, "hg19", 1) fusion <- fusions[[1]] # Set the downstream PartnerGene object to be the same as the upstream PartnerGene object partnerGeneEnsemblId(upstreamPartnerGene(fusion)) <- "test"