partnerGeneEnsemblId {chimeraviz}R Documentation

Get the Ensembl ID from a PartnerGene object

Description

This getter retrieves the Ensembl ID from a PartnerGene object

This sets the Ensembl ID of a PartnerGene object.

Usage

partnerGeneEnsemblId(x)

## S4 method for signature 'PartnerGene'
partnerGeneEnsemblId(x)

partnerGeneEnsemblId(object) <- value

## S4 replacement method for signature 'PartnerGene'
partnerGeneEnsemblId(object) <- value

Arguments

x

The PartnerGene object you wish to retrieve the Ensembl ID for.

object

The PartnerGene object you wish to set a new Ensembl ID for.

value

The new Ensembl ID.

Value

The upstream fusion partner gene Ensembl ID.

Examples

# Load data
defuseData <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- importDefuse(defuseData, "hg19", 1)
fusion <- fusions[[1]]
# Get the Ensembl ID from the upstream fusion partner gene
partnerGeneEnsemblId(upstreamPartnerGene(fusion))

# Load data
defuseData <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- importDefuse(defuseData, "hg19", 1)
fusion <- fusions[[1]]
# Set the downstream PartnerGene object to be the same as the upstream PartnerGene object
partnerGeneEnsemblId(upstreamPartnerGene(fusion)) <- "test"


[Package chimeraviz version 1.4.3 Index]