downstreamPartnerGene {chimeraviz} | R Documentation |
This getter retrieves the downstream PartnerGene object.
This sets the downstream PartnerGene object of a Fusion object
downstreamPartnerGene(x) ## S4 method for signature 'Fusion' downstreamPartnerGene(x) downstreamPartnerGene(object) <- value ## S4 replacement method for signature 'Fusion' downstreamPartnerGene(object) <- value
x |
The Fusion object you wish to retrieve the downstream PartnerGene object for. |
object |
The Fusion object you wish to set a new downstream PartnerGene object for. |
value |
The new PartnerGene object. |
The downstream PartnerGene object.
# Load data defuseData <- system.file( "extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- importDefuse(defuseData, "hg19", 1) fusion <- fusions[[1]] # Get the downstream fusion partner gene downstreamPartnerGene(fusion) # Load data defuseData <- system.file( "extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- importDefuse(defuseData, "hg19", 1) fusion <- fusions[[1]] # Set the downstream PartnerGene object to be the same as the upstream PartnerGene object downstreamPartnerGene(fusion) <- upstreamPartnerGene(fusion)