readPathoscopeData {PathoStat} | R Documentation |
Reads the data from PathoScope reports and returns a list of final guess relative abundance and count data
readPathoscopeData(input_dir = ".", pathoreport_file_suffix = "-sam-report.tsv")
input_dir |
Directory where the tsv files from PathoScope are located |
pathoreport_file_suffix |
PathoScope report files suffix |
List of final guess relative abundance and count data
example_data_dir <- system.file("example/data", package = "PathoStat") readPathoscopeData(input_dir=example_data_dir)