sizeNormalize {PathoStat}R Documentation

Normalize the given data based on library size

Description

Normalize the given data based on library size

Usage

sizeNormalize(zcounts)

Arguments

zcounts

Input counts data matrix

Value

acounts Normalized counts data matrix

Examples

example_data_dir <- system.file("example/data", package = "PathoStat")
pathoreport_file_suffix <- "-sam-report.tsv"
datlist <- readPathoscopeData(example_data_dir, pathoreport_file_suffix)
countdat <- datlist$countdata
acounts <- sizeNormalize(countdat)

[Package PathoStat version 1.4.1 Index]