get_core {PathoStat}R Documentation

Select rows of OTU matrix that meet given detection and prevalence thresholds

Description

Select rows of OTU matrix that meet given detection and prevalence thresholds

Usage

get_core(pstat, detection, prevalence)

Arguments

pstat

PathoStat object

detection

An integer specifying the minimum value considered to be "detected"

prevalence

An integer specifying the minimum number of samples that must be detected

Value

Subsetted PathoStat object


[Package PathoStat version 1.4.1 Index]