clusterOn {MultiAssayExperiment} | R Documentation |
Function that outputs a DataFrame with participant ID, sample ID, the select colData column, the expression values for select rownames, and the center values for each gene by cluster.
clusterOn(MultiAssayExperiment, colDataCols, rownames, experiments, seed = NULL)
MultiAssayExperiment |
A MultiAssayExperiment object |
colDataCols |
Select columns from the MultiAssayExperiment colData DataFrame |
rownames |
Features to be used for clustering (e.g., a set of gene names) |
experiments |
A |
seed |
A single integer value passed to set.seed (default NULL) |
A DataFrame with appended cluster and center values
example(MultiAssayExperiment) clusterOn(myMultiAssayExperiment, colDataCols = "sex", rownames = c("XIST", "RPS4Y1", "KDM5D"), experiments = "RNASeqGene", seed = 42L)