$-method | Accessing/modifying slot information |
$<--method | Accessing/modifying slot information |
API | Refer to the API documentation |
assay-method | A container for multi-experiment data |
assay-method | An integrative multi-assay class for experiment data |
assay-method | Create a Matrix of score values using a GRanges or own ranges (DEFUNCT) |
assays-method | A container for multi-experiment data |
assays-method | An integrative multi-assay class for experiment data |
c-method | An integrative multi-assay class for experiment data |
clusterOn | Check expression of a given feature against clinical variable |
colData-method | Accessing/modifying slot information |
colData<--method | Accessing/modifying slot information |
complete.cases-method | An integrative multi-assay class for experiment data |
dim-method | An extension of the GRangesList class (DEFUNCT) |
dimnames-method | A container for multi-experiment data |
dimnames-method | An integrative multi-assay class for experiment data |
dimnames-method | An extension of the GRangesList class (DEFUNCT) |
dimnames<--method | An extension of the GRangesList class (DEFUNCT) |
disjoin-method | An extension of the GRangesList class (DEFUNCT) |
duplicated | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
duplicated-method | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
ExperimentList | Construct an 'ExperimentList' object for the 'MultiAssayExperiment' object slot. |
ExperimentList-class | A container for multi-experiment data |
ExperimentList-method | A container for multi-experiment data |
experiments | Accessing/modifying slot information |
experiments-method | Accessing/modifying slot information |
experiments<- | Accessing/modifying slot information |
experiments<--method | Accessing/modifying slot information |
hasAssay | Checking assay method for any class |
intersectColumns | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
intersectRows | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
isEmpty-method | An integrative multi-assay class for experiment data |
length-method | An integrative multi-assay class for experiment data |
listToMap | Convert map from data.frame or DataFrame to list and vice versa |
longFormat | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
longFormat-method | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
longFormat-method | An extension of the GRangesList class (DEFUNCT) |
mapToList | Convert map from data.frame or DataFrame to list and vice versa |
MatchedAssayExperiment | An integrative and matched-samples class for experiment data |
MatchedAssayExperiment-class | An integrative and matched-samples class for experiment data |
mergeReplicates | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
mergeReplicates-method | A container for multi-experiment data |
mergeReplicates-method | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
mergeReplicates-method | An extension of the GRangesList class (DEFUNCT) |
metadata-method | Accessing/modifying slot information |
metadata<--method | Accessing/modifying slot information |
miniACC | Adrenocortical Carcinoma (ACC) MultiAssayExperiment |
MultiAssayExperiment | Construct a 'MultiAssayExperiment' object |
MultiAssayExperiment-class | An integrative multi-assay class for experiment data |
MultiAssayExperiment-helpers | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
MultiAssayExperiment-methods | Accessing/modifying slot information |
names-method | An integrative multi-assay class for experiment data |
pData-method | Accessing/modifying slot information |
pData<--method | Accessing/modifying slot information |
prepMultiAssay | Prepare a 'MultiAssayExperiment' instance |
RangedRaggedAssay | Create a RangedRaggedAssay (DEFUNCT) |
RangedRaggedAssay-class | An extension of the GRangesList class (DEFUNCT) |
sampleMap | Accessing/modifying slot information |
sampleMap-method | Accessing/modifying slot information |
sampleMap<- | Accessing/modifying slot information |
sampleMap<--method | Accessing/modifying slot information |
show-method | A container for multi-experiment data |
show-method | An integrative multi-assay class for experiment data |
show-method | An extension of the GRangesList class (DEFUNCT) |
subset | Subsetting a MultiAssayExperiment object |
subsetBy | Subsetting a MultiAssayExperiment object |
subsetByAssay | Subsetting a MultiAssayExperiment object |
subsetByAssay-method | Subsetting a MultiAssayExperiment object |
subsetByColData | Subsetting a MultiAssayExperiment object |
subsetByColData-method | Subsetting a MultiAssayExperiment object |
subsetByColumn | Subsetting a MultiAssayExperiment object |
subsetByColumn-method | Subsetting a MultiAssayExperiment object |
subsetByColumns | Subsetting a MultiAssayExperiment object |
subsetByRow | Subsetting a MultiAssayExperiment object |
subsetByRow-method | Subsetting a MultiAssayExperiment object |
subsetByRows | Subsetting a MultiAssayExperiment object |
updateObject-method | An integrative multi-assay class for experiment data |
upsetSamples | Create a generalized Venn Diagram analog for sample membership in multiple assays, using the upset algorithm in 'UpSetR' |
wideFormat | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
wideFormat-method | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
[-method | An extension of the GRangesList class (DEFUNCT) |
[-method | Subsetting a MultiAssayExperiment object |
[[-method | Subsetting a MultiAssayExperiment object |
[[<--method | Subsetting a MultiAssayExperiment object |