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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("XtraSNPlocs.Hsapiens.dbSNP144.GRCh38")
In most cases, you don't need to download the package archive at all.
XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
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Extra SNP locations for Homo sapiens (dbSNP Build 144)
Bioconductor version: Release (3.4)
Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh38 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).
Author: Herve Pages
Maintainer: H. Pages <hpages at fhcrc.org>
Citation (from within R,
enter citation("XtraSNPlocs.Hsapiens.dbSNP144.GRCh38")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("XtraSNPlocs.Hsapiens.dbSNP144.GRCh38")
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs |
| Version | 0.99.12 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), BSgenome |
| Imports | methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome |
| LinkingTo | |
| Suggests | Biostrings, BSgenome.Hsapiens.UCSC.hg38, SNPlocs.Hsapiens.dbSNP144.GRCh38 |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | XtraSNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.12.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | |
| Package Short Url | http://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh38/ |
| Package Downloads Report | Download Stats |
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