To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("synlet")
In most cases, you don't need to download the package archive at all.
synlet
|
|
|
|
|
|
|
|
Hits Selection for Synthetic Lethal RNAi Screen Data
Bioconductor version: Release (3.4)
Select hits from synthetic lethal RNAi screen data. For example, there are two identical celllines except one gene is knocked-down in one cellline. The interest is to find genes that lead to stronger lethal effect when they are knocked-down further by siRNA. Quality control and various visualisation tools are implemented. Four different algorithms could be used to pick up the interesting hits. This package is designed based on 384 wells plates, but may apply to other platforms with proper configuration.
Author: Chunxuan Shao <c.shao at dkfz.de>
Maintainer: Chunxuan Shao <c.shao at dkfz.de>
Citation (from within R,
enter citation("synlet")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("synlet")
Documentation
| HTML | R Script | A working Demo for synlet |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | CellBasedAssays, FeatureExtraction, Preprocessing, QualityControl, Software, Visualization |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.2.0), ggplot2 |
| Imports | doBy, dplyr, grid, magrittr, RColorBrewer, RankProd, reshape2 |
| LinkingTo | |
| Suggests | knitr, testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | synlet_1.4.0.tar.gz |
| Windows Binary | synlet_1.4.0.zip |
| Mac OS X 10.9 (Mavericks) | synlet_1.4.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/synlet/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/synlet/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
