- Home
- Bioconductor 3.4
- Software Packages
- regsplice
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("regsplice")
In most cases, you don't need to download the package archive at all.
regsplice
|
|
|
|
|
|
|
|
Lasso-Based Methods for Detection of Differential Exon Usage
Bioconductor version: Release (3.4)
Statistical methods for detection of differential exon usage in RNA-seq and exon microarray data sets, using L1 regularization (lasso) to improve power.
Author: Lukas M. Weber [aut, cre]
Maintainer: Lukas M. Weber <lukmweber at gmail.com>
Citation (from within R,
enter citation("regsplice")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("regsplice")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("regsplice")
| R Script | Example workflow for regsplice package | |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | AlternativeSplicing, DifferentialExpression, DifferentialSplicing, ExonArray, ExperimentalDesign, Microarray, RNASeq, Sequencing, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | glmnet, SummarizedExperiment, S4Vectors, BiocParallel, limma, edgeR, stats, utils, methods |
| LinkingTo | |
| Suggests | testthat, BiocStyle, knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/lmweber/regsplice |
| BugReports | https://github.com/lmweber/regsplice/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | regsplice_1.0.0.tar.gz |
| Windows Binary | regsplice_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | regsplice_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/regsplice/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/regsplice/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
