To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("msPurity")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
Assess the contribution of the targeted precursor in fragmentation acquired or anticipated isolation windows using a metric called "precursor purity". Also provides simple processing steps (averaging, filtering, blank subtraction, etc) for DI-MS data. Works for both LC-MS(/MS) and DI-MS(/MS) data.
Author: Thomas N. Lawson, Ralf Weber, Martin Jones, Mark Viant, Warwick Dunn
Maintainer: Thomas N. Lawson <thomas.nigel.lawson at gmail.com>
Citation (from within R,
enter citation("msPurity")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("msPurity")
HTML | R Script | msPurity |
Reference Manual | ||
Text | NEWS |
biocViews | MassSpectrometry, Metabolomics, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
License | GPL (>= 2) |
Depends | Rcpp |
Imports | plyr, foreach, parallel, doSNOW, stringr, mzR, reshape2, fastcluster, ggplot2, sapa |
LinkingTo | |
Suggests | testthat, xcms, BiocStyle, knitr, rmarkdown, msPurityData |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | msPurity_1.0.0.tar.gz |
Windows Binary | msPurity_1.0.0.zip |
Mac OS X 10.9 (Mavericks) | msPurity_1.0.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/msPurity/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/msPurity/ |
Package Downloads Report | Download Stats |
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