To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("geneplast")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.
Author: Rodrigo Dalmolin, Mauro Castro
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
Citation (from within R,
enter citation("geneplast")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("geneplast")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geneplast")
R Script | Geneplast main vignette | |
Reference Manual | ||
Text | NEWS |
biocViews | GeneRegulation, Genetics, Software, SystemsBiology |
Version | 1.0.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
License | GPL (>= 2) |
Depends | R (>= 3.3), methods |
Imports | snow, ape, grDevices, graphics, stats, utils |
LinkingTo | |
Suggests | BiocStyle, RUnit, BiocGenerics |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | geneplast_1.0.0.tar.gz |
Windows Binary | geneplast_1.0.0.zip |
Mac OS X 10.9 (Mavericks) | geneplast_1.0.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/geneplast/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/geneplast/ |
Package Downloads Report | Download Stats |
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