To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("chromstaR")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.
Author: Aaron Taudt, Maria Colome Tatche, Matthias Heinig, Minh Anh Nguyen
Maintainer: Aaron Taudt <aaron.taudt at gmail.com>
Citation (from within R,
enter citation("chromstaR")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("chromstaR")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chromstaR")
R Script | The chromstaR user's guide | |
Reference Manual |
biocViews | ChIPSeq, DifferentialPeakCalling, HiddenMarkovModel, MultipleComparison, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.3), GenomicRanges, ggplot2, chromstaRData |
Imports | methods, utils, grDevices, graphics, stats, foreach, doParallel, S4Vectors, GenomeInfoDb, IRanges, reshape2, Rsamtools, GenomicAlignments, bamsignals |
LinkingTo | |
Suggests | knitr, BiocStyle, testthat, biomaRt, ggbio |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | chromstaR_1.0.0.tar.gz |
Windows Binary | chromstaR_1.0.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | chromstaR_1.0.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/chromstaR/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/chromstaR/ |
Package Downloads Report | Download Stats |
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