To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("chipenrich")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
ChIP-Enrich performs gene set enrichment testing using peaks called from a ChIP-seq experiment. The method empirically corrects for confounding factors such as the length of genes, and the mappability of the sequence surrounding genes.
Author: Ryan P. Welch [aut, cph], Chee Lee [aut], Raymond G. Cavalcante [aut, cre], Laura J. Scott [ths], Maureen A. Sartor [ths]
Maintainer: Raymond G. Cavalcante <rcavalca at umich.edu>
Citation (from within R,
enter citation("chipenrich")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("chipenrich")
HTML | R Script | Vignette Title |
Reference Manual | ||
Text | NEWS |
biocViews | Bioinformatics, Enrichment, GeneSetEnrichment, Software |
Version | 1.12.1 |
In Bioconductor since | BioC 2.13 (R-3.0) (3.5 years) |
License | GPL-3 |
Depends | R (>= 3.1.0) |
Imports | chipenrich.data, GenomeInfoDb, GenomicRanges, grid, IRanges, lattice, latticeExtra, methods, mgcv, parallel, plyr, rms, S4Vectors, stringr |
LinkingTo | |
Suggests | BiocStyle, devtools, knitr, rmarkdown, roxygen2, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | chipenrich_1.12.1.tar.gz |
Windows Binary | chipenrich_1.12.1.zip |
Mac OS X 10.9 (Mavericks) | chipenrich_1.12.1.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/chipenrich/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/chipenrich/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: