To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("alpine")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
Fragment sequence bias modeling and correction for RNA-seq transcript abundance estimation.
Author: Michael Love, Rafael Irizarry
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
Citation (from within R,
enter citation("alpine")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("alpine")
HTML | R Script | alpine |
Reference Manual | ||
Text | NEWS |
biocViews | AlternativeSplicing, BatchEffect, Coverage, DifferentialSplicing, GeneExpression, Normalization, QualityControl, RNASeq, Sequencing, Software, Transcription, Visualization |
Version | 1.0.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
License | GPL (>=2) |
Depends | R (>= 3.3) |
Imports | Biostrings, IRanges, GenomicRanges, GenomicAlignments, Rsamtools, SummarizedExperiment, GenomicFeatures, speedglm, splines, graph, RBGL, stringr, stats, methods, graphics, GenomeInfoDb, S4Vectors |
LinkingTo | |
Suggests | knitr, testthat, alpineData, rtracklayer, ensembldb, BSgenome.Hsapiens.NCBI.GRCh38, RColorBrewer |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | alpine_1.0.0.tar.gz |
Windows Binary | alpine_1.0.0.zip |
Mac OS X 10.9 (Mavericks) | alpine_1.0.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/alpine/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/alpine/ |
Package Downloads Report | Download Stats |
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