To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("XBSeq")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
We developed a novel algorithm, XBSeq, where a statistical model was established based on the assumption that observed signals are the convolution of true expression signals and sequencing noises. The mapped reads in non-exonic regions are considered as sequencing noises, which follows a Poisson distribution. Given measureable observed and noise signals from RNA-seq data, true expression signals, assuming governed by the negative binomial distribution, can be delineated and thus the accurate detection of differential expressed genes.
Author: Yuanhang Liu
Maintainer: Yuanhang Liu <liuy12 at uthscsa.edu>
Citation (from within R,
enter citation("XBSeq")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("XBSeq")
Reference Manual | ||
Text | NEWS |
biocViews | DifferentialExpression, ExperimentalDesign, RNASeq, Sequencing, Software |
Version | 1.4.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
License | GPL (>=3) |
Depends | DESeq2, R (>= 3.2.0) |
Imports | pracma, matrixStats, locfit, ggplot2, methods, Biobase, dplyr, Delaporte, magrittr, roar |
LinkingTo | |
Suggests | knitr, DESeq, rmarkdown, BiocStyle, testthat |
SystemRequirements | |
Enhances | |
URL | https://github.com/Liuy12/XBSeq |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | XBSeq_1.4.0.tar.gz |
Windows Binary | XBSeq_1.4.0.zip |
Mac OS X 10.9 (Mavericks) | XBSeq_1.4.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/XBSeq/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/XBSeq/ |
Package Downloads Report | Download Stats |
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