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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TarSeqQC")
In most cases, you don't need to download the package archive at all.
TarSeqQC
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TARgeted SEQuencing Experiment Quality Control
Bioconductor version: Release (3.4)
The package allows the representation of targeted experiment in R. This is based on current packages and incorporates functions to do a quality control over this kind of experiments and a fast exploration of the sequenced regions. An xlsx file is generated as output.
Author: Gabriela A. Merino, Cristobal Fresno, Yanina Murua, Andrea S. Llera and Elmer A. Fernandez
Maintainer: Gabriela Merino <gmerino at bdmg.com.ar>
Citation (from within R,
enter citation("TarSeqQC")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TarSeqQC")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TarSeqQC")
| R Script | TarSeqQC: Targeted Sequencing Experiment Quality Control | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Alignment, Coverage, DataImport, QualityControl, Sequencing, Software, TargetedResequencing, Visualization |
| Version | 1.4.1 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.2.1), methods, GenomicRanges, Rsamtools(>= 1.20.4), ggplot2, plyr, openxlsx |
| Imports | grDevices, stats, utils, S4Vectors, IRanges, BiocGenerics, reshape2, GenomeInfoDb, BiocParallel, Biostrings, cowplot, graphics, GenomicAlignments, Hmisc |
| LinkingTo | |
| Suggests | RUnit |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bdmg.com.ar |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | TarSeqQC_1.4.1.tar.gz |
| Windows Binary | TarSeqQC_1.4.1.zip |
| Mac OS X 10.9 (Mavericks) | TarSeqQC_1.4.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/TarSeqQC/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/TarSeqQC/ |
| Package Downloads Report | Download Stats |
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