To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RCy3")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
Vizualize, analyze and explore graphs, connecting R to Cytoscape (>= 3.3.0).
Author: Tanja Muetze, Georgi Kolishovski, Paul Shannon
Maintainer: Tanja Muetze <tanja.muetze14 at alumni.imperial.ac.uk>, Georgi Kolishovski <g_kolishv at yahoo.com>, Paul Shannon <pshannon at systemsbiology.org>
Citation (from within R,
enter citation("RCy3")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RCy3")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RCy3")
R Script | RCy3 Overview | |
Reference Manual | ||
Text | README | |
Text | NEWS |
biocViews | GraphAndNetwork, Network, Software, ThirdPartyClient, Visualization |
Version | 1.5.2 |
In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.2), graph(>= 1.48.0) |
Imports | httr, methods, RCurl, RJSONIO |
LinkingTo | |
Suggests | BiocGenerics, RUnit, knitr, igraph, RColorBrewer, paxtoolsr, rmarkdown |
SystemRequirements | Cytoscape (>= 3.3.0), CyREST (>= 3.3.7), Java (>=8) |
Enhances | |
URL | https://github.com/tmuetze/Bioconductor_RCy3_the_new_RCytoscape |
BugReports | https://github.com/tmuetze/Bioconductor_RCy3_the_new_RCytoscape/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | RCy3_1.5.2.tar.gz |
Windows Binary | RCy3_1.5.2.zip |
Mac OS X 10.9 (Mavericks) | RCy3_1.5.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/RCy3/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/RCy3/ |
Package Downloads Report | Download Stats |
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