To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PCAN")
In most cases, you don't need to download the package archive at all.
PCAN
|
|
|
|
|
|
|
|
Phenotype Consensus ANalysis (PCAN)
Bioconductor version: Release (3.4)
Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).
Author: Matthew Page and Patrice Godard
Maintainer: Matthew Page <matthew.page at ucb.com> and Patrice Godard <patrice.godard at gmail.com>
Citation (from within R,
enter citation("PCAN")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PCAN")
Documentation
| HTML | R Script | Assessing gene relevance for a set of phenotypes |
| Reference Manual |
Details
| biocViews | Annotation, FunctionalPrediction, Genetics, Network, Pathways, Sequencing, Software, VariantAnnotation |
| Version | 1.2.1 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1 year) |
| License | CC BY-NC-ND 4.0 |
| Depends | R (>= 3.3), BiocParallel |
| Imports | grDevices, stats |
| LinkingTo | |
| Suggests | BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | PCAN_1.2.1.tar.gz |
| Windows Binary | PCAN_1.2.1.zip |
| Mac OS X 10.9 (Mavericks) | PCAN_1.2.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/PCAN/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/PCAN/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
