To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MotIV")
In most cases, you don't need to download the package archive at all.
MotIV
|
|
|
|
|
|
|
|
Motif Identification and Validation
Bioconductor version: Release (3.4)
This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.
Author: Eloi Mercier, Raphael Gottardo
Maintainer: Eloi Mercier <emercier at bcgsc.ca>, Raphael Gottardo <rgottard at fhcrc.org>
Citation (from within R,
enter citation("MotIV")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MotIV")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MotIV")
| R Script | The MotIV users guide | |
| Reference Manual |
Details
| biocViews | ChIPSeq, ChIPchip, GenomicSequence, Microarray, MotifAnnotation, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (7 years) |
| License | GPL-2 |
| Depends | R (>= 2.10), BiocGenerics(>= 0.1.0) |
| Imports | graphics, grid, methods, S4Vectors, IRanges(>= 1.13.5), Biostrings(>= 1.24.0), lattice, rGADEM, utils |
| LinkingTo | |
| Suggests | rtracklayer |
| SystemRequirements | GNU Scientific Library >= 1.6 (http://www.gnu.org/software/gsl/) |
| Enhances | |
| URL | |
| Depends On Me | motifStack |
| Imports Me | |
| Suggests Me | MotifDb |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MotIV_1.30.0.tar.gz |
| Windows Binary | MotIV_1.30.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | MotIV_1.30.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/MotIV/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/MotIV/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
