To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("M3Drop")
In most cases, you don't need to download the package archive at all.
M3Drop
|
|
|
|
|
|
|
|
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
Bioconductor version: Release (3.4)
This package fits a Michaelis-Menten model to the pattern of dropouts in single-cell RNASeq data. This model is used as a null to identify significantly variable (i.e. differentially expressed) genes for use in downstream analysis, such as clustering cells.
Author: Tallulah Andrews <tallulandrews at gmail.com>
Maintainer: Tallulah Andrews <tallulandrews at gmail.com>
Citation (from within R,
enter citation("M3Drop")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("M3Drop")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("M3Drop")
| R Script | Introduction to M3Drop | |
| Reference Manual | ||
| Text | README | |
| Text | NEWS |
Details
| biocViews | DifferentialExpression, DimensionReduction, FeatureExtraction, GeneExpression, RNASeq, Sequencing, Software, Transcriptomics |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.3), numDeriv |
| Imports | RColorBrewer, gplots, bbmle, statmod, grDevices, graphics, stats |
| LinkingTo | |
| Suggests | ROCR, knitr, M3DExampleData |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/tallulandrews/M3Drop |
| BugReports | https://github.com/tallulandrews/M3Drop/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | M3Drop_1.0.0.tar.gz |
| Windows Binary | M3Drop_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | M3Drop_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/M3Drop/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/M3Drop/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
