To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GGtools")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
software and data for analyses in genetics of gene expression and/or DNA methylation
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R,
enter citation("GGtools")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GGtools")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GGtools")
R Script | GGtools: software for eQTL identification | |
Reference Manual | ||
Text | README | |
Text | NEWS |
biocViews | GeneExpression, GeneticVariability, Genetics, SNP, Software |
Version | 5.10.1 |
In Bioconductor since | BioC 1.9 (R-2.4) (10.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.14), GGBase(>= 3.19.7), data.table, parallel, Homo.sapiens |
Imports | methods, utils, stats, BiocGenerics, snpStats, ff, Rsamtools, AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin, rtracklayer, Gviz, stats4, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges, iterators, Biostrings, ROCR, biglm, ggplot2, reshape2 |
LinkingTo | |
Suggests | GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP144.GRCh37, multtest, aod, rmeta |
SystemRequirements | |
Enhances | MatrixEQTL, foreach, doParallel, gwascat |
URL | |
Depends On Me | ceu1kg, cheung2010 |
Imports Me | ceuhm3, GeneGeneInteR |
Suggests Me | cgdv17, dsQTL, GGBase, gQTLBase, gwascat, hmyriB36 |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | GGtools_5.10.1.tar.gz |
Windows Binary | GGtools_5.10.1.zip |
Mac OS X 10.9 (Mavericks) | GGtools_5.10.1.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/GGtools/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/GGtools/ |
Package Downloads Report | Download Stats |
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