To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ABAEnrichment")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
The package ABAEnrichment is designed to test for enrichment of user defined candidate genes in the set of expressed genes in different human brain regions. The core function 'aba_enrich' integrates the expression of the candidate gene set (averaged across donors) and the structural information of the brain using an ontology, both provided by the Allen Brain Atlas project. 'aba_enrich' interfaces the ontology enrichment software FUNC to perform the statistical analyses. Additional functions provided in this package like 'get_expression' and 'plot_expression' facilitate exploring the expression data.
Author: Steffi Grote
Maintainer: Steffi Grote <steffi_grote at eva.mpg.de>
Citation (from within R,
enter citation("ABAEnrichment")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ABAEnrichment")
HTML | R Script | ABAEnrichment: gene expression enrichment in human brain regions |
Reference Manual | ||
Text | NEWS |
biocViews | GeneExpression, GeneSetEnrichment, Software |
Version | 1.4.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
License | GPL (>= 2) |
Depends | R (>= 3.2) |
Imports | Rcpp (>= 0.11.5), gplots (>= 2.14.2), ABAData(>= 0.99.2) |
LinkingTo | Rcpp |
Suggests | BiocStyle, knitr, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | ABAEnrichment_1.4.0.tar.gz |
Windows Binary | ABAEnrichment_1.4.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | ABAEnrichment_1.4.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/ABAEnrichment/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/ABAEnrichment/ |
Package Downloads Report | Download Stats |
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