To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("systemPipeRdata")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
systemPipeRdata is a helper package to generate with a single command NGS workflow templates that are intended to be used by its parent package systemPipeR. The latter is an environment for building end-to-end analysis pipelines with automated report generation for next generation sequence (NGS) applications such as RNA-Seq, RIBO-Seq, ChIP-Seq, VAR-Seq and many others. Detailed examples for using systemPipeRdata are given in systemPipeR's overview vignette.
Author: Thomas Girke
Maintainer: Thomas Girke <thomas.girke at ucr.edu>
Citation (from within R,
enter citation("systemPipeRdata")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("systemPipeRdata")
HTML | R Script | Overview Vignette |
Reference Manual | ||
Text | README | |
Text | NEWS |
biocViews | Alignment, ChIPSeq, Coverage, DataImport, ExperimentData, GeneExpression, GeneSetEnrichment, Genetics, Infrastructure, MethylSeq, QualityControl, RNASeq, SNP, Sequencing |
Version | 1.2.4 |
License | Artistic-2.0 |
Depends | methods |
Imports | BiocGenerics |
LinkingTo | |
Suggests | RUnit, BiocStyle, knitr, rmarkdown, systemPipeR |
SystemRequirements | |
Enhances | |
URL | https://github.com/tgirke/systemPipeRdata |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | systemPipeRdata_1.2.4.tar.gz |
Windows Binary | |
Mac OS X 10.9 (Mavericks) | |
Subversion source | (username/password: readonly) |
Package Short Url | http://bioconductor.org/packages/systemPipeRdata/ |
Package Downloads Report | Download Stats |
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