To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("fission")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
This package provides a RangedSummarizedExperiment object of read counts in genes for a time course RNA-Seq experiment of fission yeast (Schizosaccharomyces pombe) in response to oxidative stress (1M sorbitol treatment) at 0, 15, 30, 60, 120 and 180 mins. The samples are further divided between a wild-type group and a group with deletion of atf21. The read count matrix was prepared and provided by the author of the study: Leong HS, Dawson K, Wirth C, Li Y, Connolly Y, Smith DL, Wilkinson CR, Miller CJ. "A global non-coding RNA system modulates fission yeast protein levels in response to stress". Nat Commun 2014 May 23;5:3947. PMID: 24853205. GEO: GSE56761.
Author: Michael Love
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
Citation (from within R,
enter citation("fission")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("fission")
HTML | R Script | Fission yeast time course |
Reference Manual |
biocViews | ExperimentData, GEO, Genome, RNASeqData, Saccharomyces_cerevisiae_Data, SequencingData |
Version | 0.106.2 |
License | LGPL |
Depends | R (>= 2.10), SummarizedExperiment |
Imports | |
LinkingTo | |
Suggests | knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | fission_0.106.2.tar.gz |
Windows Binary | |
Mac OS X 10.9 (Mavericks) | |
Subversion source | (username/password: readonly) |
Package Short Url | http://bioconductor.org/packages/fission/ |
Package Downloads Report | Download Stats |
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