To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("HiCDataHumanIMR90")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).
Author: Nicolas Servant
Maintainer: Nicolas Servant <Nicolas.Servant at curie.fr>
Citation (from within R,
enter citation("HiCDataHumanIMR90")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("HiCDataHumanIMR90")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HiCDataHumanIMR90")
R Script | HiC Data Human Fibroblast Dixon et al. 2012 | |
Reference Manual |
biocViews | ExperimentData, GEO, Genome, Homo_sapiens_Data |
Version | 0.106.0 |
License | GPL-3 |
Depends | R (>= 2.10) |
Imports | |
LinkingTo | |
Suggests | HiTC |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | HiTC |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | HiCDataHumanIMR90_0.106.0.tar.gz |
Windows Binary | |
Mac OS X 10.9 (Mavericks) | |
Subversion source | (username/password: readonly) |
Package Short Url | http://bioconductor.org/packages/HiCDataHumanIMR90/ |
Package Downloads Report | Download Stats |
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