To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spade")
In most cases, you don't need to download the package archive at all.
spade
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This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
SPADE -- An analysis and visualization tool for Flow Cytometry
Bioconductor version: Release (3.3)
SPADE, or Spanning tree Progression of Density normalized Events, is an analysis and visualization tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes.
Author: M. Linderman, P. Qiu, E. Simonds, Z. Bjornson
Maintainer: Zach Bjornson <bjornson at stanford.edu>
Citation (from within R,
enter citation("spade")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spade")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spade")
| R Script | spade package | |
| Reference Manual | ||
| Text | LICENSE |
Details
| biocViews | Clustering, FlowCytometry, GUI, GraphAndNetwork, Software, Visualization |
| Version | 1.20.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (4.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.11), igraph, Rclusterpp |
| Imports | Biobase, flowCore |
| LinkingTo | |
| Suggests | flowViz |
| SystemRequirements | |
| Enhances | |
| URL | http://cytospade.org |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | spade_1.20.0.tar.gz |
| Windows Binary | spade_1.20.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/spade/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/spade/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
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