To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("pvac")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
The package contains the function for filtering genes by the proportion of variation accounted for by the first principal component (PVAC).
Author: Jun Lu and Pierre R. Bushel
Maintainer: Jun Lu <jlu276 at gmail.com>, Pierre R. Bushel <bushel at niehs.nih.gov>
Citation (from within R,
enter citation("pvac")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("pvac")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pvac")
R Script | PCA-based gene filtering for Affymetrix GeneChips | |
Reference Manual |
biocViews | Microarray, OneChannel, QualityControl, Software |
Version | 1.20.0 |
In Bioconductor since | BioC 2.8 (R-2.13) (5.5 years) |
License | LGPL (>= 2.0) |
Depends | R (>= 2.8.0) |
Imports | affy(>= 1.20.0), stats, Biobase |
LinkingTo | |
Suggests | pbapply, affydata, ALLMLL, genefilter |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | pvac_1.20.0.tar.gz |
Windows Binary | pvac_1.20.0.zip |
Mac OS X 10.9 (Mavericks) | pvac_1.20.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/pvac/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/pvac/ |
Package Downloads Report | Download Stats |
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