To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("pdInfoBuilder")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.
Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com>
Citation (from within R,
enter citation("pdInfoBuilder")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("pdInfoBuilder")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pdInfoBuilder")
Building Annotation Packages with pdInfoBuilder for Use with the oligo Package | ||
R Script | PDInfo Package Building Affymetrix Mapping Chips | |
Reference Manual | ||
Text | NEWS |
biocViews | Annotation, Infrastructure, Software |
Version | 1.36.0 |
In Bioconductor since | BioC 2.0 (R-2.5) (9.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.2.0), methods, Biobase(>= 2.27.3), RSQLite (>= 1.0.0), affxparser(>= 1.39.4), oligo(>= 1.31.5) |
Imports | Biostrings(>= 2.35.12), BiocGenerics(>= 0.13.11), DBI (>= 0.3.1), IRanges(>= 2.1.43), oligoClasses(>= 1.29.6), S4Vectors(>= 0.5.22) |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | maqcExpression4plex |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | pdInfoBuilder_1.36.0.tar.gz |
Windows Binary | pdInfoBuilder_1.36.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | pdInfoBuilder_1.36.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/pdInfoBuilder/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/pdInfoBuilder/ |
Package Downloads Report | Download Stats |
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