To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("TIN")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
The TIN package implements a set of tools for transcriptome instability analysis based on exon expression profiles. Deviating exon usage is studied in the context of splicing factors to analyse to what degree transcriptome instability is correlated to splicing factor expression. In the transcriptome instability correlation analysis, the data is compared to both random permutations of alternative splicing scores and expression of random gene sets.
Author: Bjarne Johannessen, Anita Sveen and Rolf I. Skotheim
Maintainer: Bjarne Johannessen <bjajoh at rr-research.no>
Citation (from within R,
enter citation("TIN")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("TIN")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TIN")
R Script | Introduction to the TIN package | |
Reference Manual | ||
Text | NEWS |
biocViews | AlternativeSplicing, DifferentialSplicing, ExonArray, GeneExpression, Genetics, Microarray, Software |
Version | 1.4.1 |
In Bioconductor since | BioC 3.1 (R-3.2) (1.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.12.0), data.table, impute, aroma.affymetrix |
Imports | WGCNA, squash, stringr |
LinkingTo | |
Suggests | knitr, aroma.light, affxparser, RUnit, BiocGenerics |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | TIN_1.4.1.tar.gz |
Windows Binary | TIN_1.4.1.zip |
Mac OS X 10.9 (Mavericks) | TIN_1.4.1.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/TIN/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/TIN/ |
Package Downloads Report | Download Stats |
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