To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("InteractionSet")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.
Author: Aaron Lun <alun at wehi.edu.au>, Malcolm Perry <mgperry32 at gmail.com>, Liz Ing-Simmons <liz.ing-simmons12 at csc.mrc.ac.uk>
Maintainer: Aaron Lun <alun at wehi.edu.au>
Citation (from within R,
enter citation("InteractionSet")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("InteractionSet")
HTML | R Script | Interacting with InteractionSet classes for genomic interaction data |
Reference Manual | ||
Text | NEWS |
biocViews | DataRepresentation, HiC, Infrastructure, Software |
Version | 1.0.4 |
In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
License | GPL-3 |
Depends | R (>= 3.3.0), GenomicRanges, SummarizedExperiment(>= 1.1.6) |
Imports | IRanges, S4Vectors(>= 0.9.24), GenomeInfoDb, BiocGenerics, methods, Matrix |
LinkingTo | |
Suggests | testthat, knitr, rmarkdown, BiocStyle |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | diffHic, GenomicInteractions |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | InteractionSet_1.0.4.tar.gz |
Windows Binary | InteractionSet_1.0.4.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | InteractionSet_1.0.4.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/InteractionSet/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/InteractionSet/ |
Package Downloads Report | Download Stats |
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